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This is a very useful webpage if you would like to contact any company about any issue:

elliott.org/company-contacts/

Neuro-evo conference at HHMI Janelia on May 15-18, 2023. Join us for the third edition!

Application deadline: Jan 27 (11:59 p.m. EST) 2023.

Apply here: janelia.org/you-janelia/confer

"Historically, with the study of the most convenient animal models —from the giant axon of the squid and the lobster's stomatogastric circuits to Aplysia's synapses and C. elegans' circuits — neuroscientists revealed some of the operating principles of the nervous system, which were then found to apply broadly across phyla. The third instalment of this meeting will once again bring together neuroscientists working on a broad diversity of animal models in an effort to compare circuits across phyla as a means to crack their function."

We have an exceptional opportunity at our center for a new group leader at VIB in Leuven. We are looking for a new colleague who wants to use computational methods to investigate molecular and/or cellular aspects of neurobiology. This position not only comes with substantial and renewable core funding and start-up package, but it is also linked to a tenure track position at KU Leuven.

More information on our center can be found on our website cbd.sites.vib.be/en.

Deadline to apply for the HHMI Hanna H. Gray Fellows Program is 12/7/2022 hhmi.org/programs/hanna-h-gray
Please apply - this is a great program!

Because this was my only post ever that got +5k likes on Twitter, it is only fitting that this is my first post here ⤵️

I created an awesome-PhD list on GitHub where everybody can contribute with their own tools and resources! 🔥

✨ Check it out and contribute yourself via pull requests: github.com/helenahartmann/awes ✨

#ScienceMastodon #phdchat #academicmastodon

@christlet Great that Twitter had all of that when we started playing with it 😉.

For more information (but fewer cats), see the actual paper and NSDI presentation at usenix.org/conference/nsdi21/p.

This was joint work with Marco Canini, Chen-Yu Ho, Panos Kalnis, Peter Richtaric (KAUST); Amedeo Sapio, Changhoon Kim, Masoud Moshref (Intel / Barefoot Networks), Jacob Nelson (Microsoft Research), and Arvind Krishnamurthy (UW)

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Hi Mastodon! 🐘 The Max Planck Society will provide you with exciting toots about science, research and the people behind it.

French authorities declare the use of Microsoft Office and Google Docs illegal in schools and education markets, as they don’t follow GDPR and might disturb later competition by making students used to these proprietary solutions.

questions.assemblee-nationale.

Unbelievable, multiview-reconstruction & BigStitcher have finally lost their Imglib1-dependency! And all processing is now virtual thus scaling to larger volumes ... @herrsaalfeld

github.com/preibischlab/multiv
github.com/PreibischLab/BigSti

@preibischs @naturemethods @davi... this looked readable in a browser, but borked in the Android client. No lists, quotes, paragraphs in client markdown?

@preibischs @naturemethods Congratulations! But why the weird undersell in the size department?

> Owing to current limitations in Java arrays, the theoretical upper limit is 2^31 = 2,147,483,648 blocks, with each block maximally containing 2^31 = 2,147,483,648 pixels (for example 2048 × 2048 × 512 pixels). Given sufficient storage and compute resources, the limit for RS-FISH is thus 4,072 peta-pixels (4,072 petabytes at 8 bit, or 8,144 petabytes at 16 bit) taking into account the overhead, whereas every individual block locally processes only 2 gigapixels (2^31 = 2,147,483,648 pixels).

1. 2G^2 is 4exa, not 4peta
2. ImgLib2's `CellImg` manages 2^63 blocks, not 2^31, we had to change this for @davi 's [FAFB](linkinghub.elsevier.com/retrie) which had >2^31 blocks.

RS-FISH was just released as open access article in @naturemethods

RS-FISH is a user-friendly software for accurate spot detection that is applicable to smFISH experiments, spatial transcriptomics, and spatial genomics. The approach enables fast spot detection in even very large volumetric datasets.

github.com/PreibischLab/RS-FIS
github.com/PreibischLab/RS-FIS

nature.com/articles/s41592-022

If you want a sneak-peak of my portion of the #NeurIPS 2022 tutorial on Creative AI, here it is: youtu.be/QBolMllrNp0

It's a 30' primer on story, poetry, and humor generation.

Don't forget that Janelia's Computation & Theory area is looking for both [Senior] Group Leader candidates (janelia.org/our-research/our-l) and Theory Fellows (janelia.org/our-research/overv)! Are you working on interesting computational and theoretical approaches to address fundamental biological questions? Talk to us!

each neuron synthesising 1 million proteins per minute

total number of proteins per neuron 10 billion

RT @LukeChaoSun@twitter.com

Our latest review article puts together the 'BioNumbers' of a #neuron & its #proteome, offering quantitative integrative view of #protein turnover @MpiBrain@twitter.com @erin_schuman@twitter.com @maxplanckpress@twitter.com
doi.org/10.1016/j.mcn.2022.103

🐦🔗: twitter.com/LukeChaoSun/status

friend taught me about something recently, known as Gell-Mann Amnesia

quoting this page:
https://www.epsilontheory.com/gell-mann-amnesia/

---

Briefly stated, the Gell-Mann Amnesia effect is as follows. You open the newspaper to an article on some subject you know well. In Murray’s case, physics. In mine, show business. You read the article and see the journalist has absolutely no understanding of either the facts or the issues. Often, the article is so wrong it actually presents the story backward—reversing cause and effect. I call these the “wet streets cause rain” stories. Paper’s full of them.

In any case, you read with exasperation or amusement the multiple errors in a story, and then turn the page to national or international affairs, and read as if the rest of the newspaper was somehow more accurate about Palestine than the baloney you just read. You turn the page, and forget what you know.

---

i've been thinking about this very strongly with every news article that comes out about "The Mastodon Network" or whatever, and with the whole journa.host thing.

i don't normally consume a lot of news, tech or otherwise, and i hadn't identified this pattern in my own thinking. but i sure as hell do now, especially with all these clueless writers churning out paragraph after paragraph, full of nonsense, about a subject that hits pretty close to home for me

📢 Please RT
Join our #fly neuroscience lab.

4 year fully funded #phD fellowship to study how animals make decisions during conflicting situations. #neuroscience #drosophila

Deadline 20th Jan
Get in touch with questions.

warwick.ac.uk/fac/cross_fac/mi

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