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Want to master Reproducibility with #rstats?

Join our course in October where you'll learn to manage environments, track changes with #Git, collaborate with @GitHub and publish containers.

Enhance your skills and make your work more efficient!

Instructors: @eliocamp @paocorrales

Important and sobering thread - we ALL need to do better. Whatever our role in this ecosystem

This is appalling

I am so sorry that you had to go through this @ESanganyado
---
RT @ESanganyado
I have decided to leave several editorial boards this year because I realized I was an unnecessary hurdle to authors. Peer reviewers are less likely to accept a request from a non-white EBM with a "strange" name like mine 1/5 twitter.com/…
twitter.com/ESanganyado/status

That the Internet Archive lost their lawsuit only serves to prove that we need more projects like Sci-Hub and Library Genesis to bolster the availability that more mainstream libraries cannot provide due to pressure applied by rent-seekers.

When a fish beats its tail, it produces vortices in the water that other fish could take advantage of to save energy while swimming. ​​elifesciences.org/articles/868

strange thought:

If I got 1$ per month for every package I maintain for Fedora Linux, that would basically be enough money to live on ...

Popular packages I'm responsible for include:

- the new Sequoia based GPG backend for RPM (present on *every single Fedora 38 install*)
- CLI tools like ripgrep, exa, lsd, bat
- Rust bindings for GLib, GTK3, GTK4, GStreamer, etc. (which are used to build librsvg2, gnome-tour, helvum, etc.)

so ... who wants to adopt some packages? 😁
github.com/sponsors/decathorpe

"My designs were so deceptively simple that it was easy for people to assume I just had easy problems, whereas others, who made super-complicated designs (that were technically unsound and never worked) and were able to talk about them in ways that nobody understood, were considered geniuses." -- Radia Perlman, the woman who developed the algorithm behind the Spanning Tree Protocol, an innovation that made today's Internet possible.

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#WomenInTech #WomenInSTEM #Design #StrongWomen #Tech #STEM

A friend and ex-colleague is #hiring for a #NGS #datamanagement / #developer. This probably ideal for someone with #database building and / or #ontology knowledge looking to work at the forefront of human genetics data with the The German Human Genome-Phenome Archive (GHGA)

verw.tu-dresden.de/StellAus/st
#bioinformatics #datascience

I've recently thought about if there is not an easier to learn alternative to #LaTeX...and maybe even in #Rust!?

My inner voice: Come on, you are a dreamer!

Well...sometimes dreams come true:

#Typst - A new markup-based typesetting system that is powerful and easy to learn.

typst.app/

It is in beta and open source:
github.com/typst/typst

#Markup #OpenSource #TypeSetting #PDF #RustLang

Such a wonderfully clear result today that the “exciting approach that we were going to use to do many things” does not work. I am actually really happy about it. I mean, it would’ve been great if it did work, but there’s nothing worse than weeks of tantalising glimpses that something might work if the conditions are just right.

#CellBiology #LifeOfPI

Can someone suggest software/pipelines for analysis of alternative from long-read (from )? Basically, I'd like to quantify abundance of different splicing variants in different samples.

@TheManyVoices @feditips
Also, you can add an alt-text description of the audio just as you can with an image or video!

@maegul @academicchatter A wonderful shared repository of useful graphics, many with open licences, exists

bioicons.com

created by Simon Duerr.

I just served as a @pcirr recommender for a cool piece of research by Alley, Axt, and Flake. They will determine whether data from students and crowdsourced online platforms measure the same thing.

Thanks to our wonderful reviewers @itchyshin and Benjamin Farrar!

#RegisteredReport: osf.io/32unb

Recommendation: rr.peercommunityin.org/article

I really like the idea of microPublications. This one is an intriguing observation:

micropublication.org/journals/

I’m sure many labs have some interesting results tucked away that suit this format.

#CellBiology #MembraneTraffic #ScienceMastodon

Wow, we've reached new heights... just got a email from a journal using anti spam-filter techniques straight out of the 90s... (which obviously work with the crappy spam filters our uni uses...)

I have created a little R interface to deconvolute assay data.

This is based on Brown 2008 - Inferring gene expression dynamics from reporter protein levels (but does not include volume correction)

The app also reports initial rate, maximum and decay rate

It is available here, for anyone to enjoy, modify etc

github.com/nicolaromano/LucDec

Anyone know a good review paper / learning resource for building gene regulatory networks #GRN from #scATACseq #ATACseq and/or #scRNAseq data?
Thanks!

It's time to vote for Inkscape's 1.3 About Screen Contest!

We're proud to present an amazing gallery of entries: 🖼️

54 entries by 43 #Inkscape artists!
Thanks to all who entered!

Community vote open from
Mar. 20 (0:00 UTC) to Mar. 26, 2023 (23:59:59 UTC). 🗳️

inkscape.org/gallery/=about-sc

#ArtWithOpenSource #InkscapeAboutScreen

At the local primary school, the children sing a Mother’s day song with the lyric

“My mum’s ever so clever. She may not have a degree,
But she can help with my homework and that’s what matters to me.”

After many complaints the school have agreed to change the lyric (hooray!). To:

“… even though she’s got a degree,”

Which simultaneously makes having a degree sound bad and also shaming Mum’s without degrees.

#EverydaySexism
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Further damage to the dysfunctional academic career system in Germany: The government has just presented its reform of the fixed term contract law (#WissZeitVG).
After years of #IchbinHanna protests, the max. length of fixed contracts for postdocs has been reduced to 3 years. The cynical argument: Careers become more predictable, because 3 years after your PhD, it's either professorship, third party funding, or exit.
The lack of a broader tenure track system makes this a devastating development.

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